installation of package 'hmisc' had non zero exit status
***> wrote: Find centralized, trusted content and collaborate around the technologies you use most. installation of package 'hmisc' had non zero exit status Thanks for contributing an answer to Stack Overflow! Install the development files for liblapack, libblas, and libjpeg. ./inst/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument Eigen::internal::packet_traits::type {aka __m128d} [-Wignored-attributes] I'm surprised that there is not more information in the warning messages. download of package Hmisc failed. See, Error installing Hmisc package in R Studio, How a top-ranked engineering school reimagined CS curriculum (Ep. Not the answer you're looking for? I am able now to compile Hmisc This problem is to your account. Unable to Install latest build of Hmisc package for R 3.2.0 #26 - Github What is this brick with a round back and a stud on the side used for? Also, see https://cran.r-project.org/bin/macosx/RMacOSX-FAQ.html#Installation-of-source-packages, which references the file /Library/Frameworks/R.framework/Resources/etc/Makeconf. not occuring on linux or windows to my knowledge. https://repo.bppt.go.id/cran/bin/windows/contrib/3.4/Hmisc_4.0-3.zip, https://github.com/notifications/unsubscribe-auth/AhEQlmpkvpoek6zUIFvhyTzN0tfQ7KMuks5tNc1TgaJpZM4RGgXK, https://gcc.gnu.org/wiki/GFortranBinaries, https://cran.r-project.org/bin/macosx/tools/, https://cran.r-project.org/bin/macosx/RMacOSX-FAQ.html#Installation-of-source-packages, https://cran.r-project.org/web/packages/backports/index.html, removing /home/yash/R/x86_64-pc-linux-gnu-library/4.2/RcppEigen, removing /home/yash/R/x86_64-pc-linux-gnu-library/4.2/jpeg, removing /home/yash/R/x86_64-pc-linux-gnu-library/4.2/interp, removing /home/yash/R/x86_64-pc-linux-gnu-library/4.2/stringr, removing /home/yash/R/x86_64-pc-linux-gnu-library/4.2/knitr, removing /home/yash/R/x86_64-pc-linux-gnu-library/4.2/latticeExtra, removing /home/yash/R/x86_64-pc-linux-gnu-library/4.2/htmlTable, removing /home/yash/R/x86_64-pc-linux-gnu-library/4.2/Hmisc. Powered by Discourse, best viewed with JavaScript enabled. Warning in install.packages : Start a fresh R session with no packages loaded. Why don't we use the 7805 for car phone chargers? cannot open: HTTP status was '404 Not Found' R Version: 3.2.0 (2015-04-16) x86_64-w64-mingw32 (64bit) download of package rms failed By clicking Sign up for GitHub, you agree to our terms of service and Simple deform modifier is deforming my object, Copy the n-largest files from a certain directory to the current one, Embedded hyperlinks in a thesis or research paper. Package 'Hmisc' installed, but error when trying 'library' to activate If you start a new R session without bioconductor loaded, I assume you can load Hmisc successfully? I'll look for a Mac user to give us the general solution. Is "I didn't think it was serious" usually a good defence against "duty to rescue"? Making statements based on opinion; back them up with references or personal experience. By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. Looking on the net I'm not seeing many people having problems with it. (as lib is unspecified) g++ -std=gnu++14 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -o RcppEigen.so RcppEigen.o RcppExports.o fastLm.o init.o -llapack -lblas -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. .onLoad failed in loadNamespace() for 'checkmate', details: I manually installed backports as shown above and still had the failure. E.g., when install.packages("Hmisc") returned: I'd try to install rpart. xcolor: How to get the complementary color, Can corresponding author withdraw a paper after it has accepted without permission/acceptance of first author, Ubuntu won't accept my choice of password, Adding EV Charger (100A) in secondary panel (100A) fed off main (200A). Generating points along line with specifying the origin of point generation in QGIS. collect2: error: ld returned 1 exit status The weird thing is that I have downloaded the big data lite (4.4) image and can install packages without any errors. Posit Community. I updated RStudio to Version 0.99.473. Installing package into /home/username/R/x86_64-unknown-linux-gnu-library/3.1, ERROR: dependencies tibble, dplyr are not available for package tidyr, * removing /home/username/R/x86_64-unknown-linux-gnu-library/3.1/tidyr, I can't install packages in R(studio). error: there is no package called backports. Content Discovery initiative April 13 update: Related questions using a Review our technical responses for the 2023 Developer Survey, Installation of packages stringr and stringi had non-zero exit status, Installation of package forecast had non-zero exit status, Installing rsymphony package for r (non-zero exit status), Error in installing *install.packages("tstools")* in language R, I am unable to install ggplot, there occurs some error. By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. Thanks for contributing an answer to Stack Overflow! Frank E Harrell Jr Professor and Chairman School of Medicine, Department of Biostatistics Vanderbilt University. -installing backports. When I tried to manually download and install Hmisc_3.16-0.zip I get the following error: install.packages(pkgs="C:/Users/Erik/Downloads/Hmisc_3.16-0.zip" , lib="C:/Users/Erik/Documents/R/win-library/3.2") New comments cannot be posted to this locked post. Loading required package: survival Any help is appreciated as I am trying to solve this problem for days now. Hi there, I have some problems installing the package Hmisc. xcolor: How to get the complementary color. Loading required package: Formula I'm learning and will appreciate any help, Image of minimal degree representation of quasisimple group unique up to conjugacy, Passing negative parameters to a wolframscript, Simple deform modifier is deforming my object. RStudio Version: 0.98.1091 (I think 64bit) privacy statement. rev2023.5.1.43405. @neilfws, I edited the question. When I looked at http://cran.rstudio.com/bin/windows/contrib/3.2 I found that Hmisc_3.16-0.zip exists but was not being referenced. Interpreting non-statistically significant results: Do we have "no evidence" or "insufficient evidence" to reject the null? Wonder what the conflict was -- but it is now fixed in that Hmisc compiled.. As an aside, in the world of biological sequence data and the need to analyze, bioconductor is a means by which to get that job done and to scale efficiently. library(biovizBase). If installing rpart failed because it had out-of-date dependencies, I'd load them, then try again to install rpart, then try again to install Hmisc. How do the interferometers on the drag-free satellite LISA receive power without altering their geodesic trajectory? Well occasionally send you account related emails. Then update haven manually. no .Rprofile defined. I was finally able to install Hmisc after what could be called a brute-force recursive installation of whatever packages were noted as needing updated in a given error message for a package installation. 565), Improving the copy in the close modal and post notices - 2023 edition, New blog post from our CEO Prashanth: Community is the future of AI. Then, install labbelled manually. Error in library("Hmisc"): there is no package called 'Hmisc' @adeslatt I'm not familiar with Bioconductor at all. Hmisc compiled just fine for me after that. You are receiving this because you authored the thread. 3: In install.packages("UsingR") : installation of package 'SparseM' had non-zero exit status. I learned that I need to install some package by using: There are some warning message i am not sure whether it means successful or not: Error in library(Hmisc): there is no package called 'Hmisc'. 565), Improving the copy in the close modal and post notices - 2023 edition, New blog post from our CEO Prashanth: Community is the future of AI. I can't install packages in R(studio) in the cloud.When I sayinstall.packages( message "/rms_4.3-1.zip' is not available (for R version 3.2.0)" seems to indicate that there's something needed when building the packages to specify that they work with R 3.2.0. @StatsQuo Were you able to manually install backports? The current R version is 4.0.2. package C:/Users/Erik/Downloads/rms_4.3-1.zip is not available (for R version 3.2.0). Then, I install Rstudio using anaconda. Start a fresh R session with no packages loaded. The only experience I have with those issues are that I had to make sure I was using the latest version of R and the latest version of RStudio so that install.packages would install the very latest Hmisc. If you were on a Debian based system you could run sudo apt install libjpeg-dev liblapack-dev libblas-dev. Interesting. Horizontal and vertical centering in xltabular. R Version 3.2.0 I installed mine from https://gcc.gnu.org/wiki/GFortranBinaries (which is referenced https://cran.r-project.org/bin/macosx/tools/).
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